8 cheminformatics jobs at 6 companies in San Diego, CA
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Data Science, Cheminformatics & AI: Lab-in-the-Loop Hit Finding
San Diego, California, United States
$139k-$257k/yr OnsiteFull Time
4+ YOEPhD or equivalent degree with 4+ years post‑graduate experience applying cheminformatics, data science, and ML to hit finding; proficiency in Python, SQL, Linux/HPC/cloud; strong communication and interdisciplinary collaboration skills.
Python (Programming Language), Pandas (Python), R (Programming Language), Sql (Structured Query Language), Linux, Enamine REAL
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Data Science, Cheminformatics & AI: Lab-in-the-Loop Hit Finding
San Diego, California, United States
$139k-$257k/yr OnsiteFull Time
4+ YOEPhD or relevant degree with 4+ years post-graduate experience in cheminformatics/data science for hit finding; proficiency in Python, Linux/cloud, SQL; experience with hit-finding, ML, and agentic/self-driving lab workflows.
Linux, Python, SQL, Enamine REAL
6d
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Technical Product Manager, Chemistry IT Systems
Spring House or San Diego or La Jolla or Beerse
$102k-$177k/yr HybridFull Time
5+ YOEBachelor's degree in chemistry, life science, or data science required; 5+ years in pharmaceutical R&D molecular discovery; experience with scientific IT, cheminformatics, databases, KNIME or Pipeline Pilot, chemistry software, and analytics tools.
KNIME, Pipeline Pilot, Schrödinger, BIOVIA, Revvity, OpenEye, ChemAxon, RDKit, Oligokit, Spotfire, ETL, AI, machine learning
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Senior Computational Chemist
La Jolla, California, United States
$106k-$177k/yr HybridFull Time
Ph.D. (or M.S. with substantial industry experience) in computational chemistry/cheminformatics/computer science; deep cheminformatics knowledge; Python and RDKit experience; numpy/pandas; applied ML experience; data pipeline and prototyping skills.
Python, RDKit, numpy, pandas, SQL, RestAPI, GitHub, SLURM, AWS, GCP, GitHub Copilot
2mo
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Staff Engineer, Chemical Search
San Diego, California, United States
$180k-$200k/yr OnsiteFull Time
5+ YOEProven production chemistry search system design and implementation; strong cheminformatics tooling experience; proficient in Python; knowledge of retrosynthesis and molecule representations; experience with vector indexes.
RDKit, OpenEye, AiZynthFinder, ASKCOS, Synthia, IBM RXN
6d
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Advisor - Agent Research
San Francisco or Indianapolis or San Diego or Boston or South San Francisco
$152k-$222k/yr OnsiteFull Time
1+ YOEPhD, or equivalent master's or bachelor's experience, in ML, bioinformatics, cheminformatics, computer science, or related field; 1–2 years scientific AI/ML experience and hands-on AI model training.
Python, PyTorch, TensorFlow, JAX, Hugging Face, PPO, GRPO, DPO, RLHF, RLAIF, TRL, RDKit, MLflow, OpenAI Agent SDK, Anthropic Agent SDK, LangChain, Smol agents, AWS, Azure, Nextflow, Argo, Kubernetes, GitHub, NeurIPS, ICML, ICLR, ACL, EMNLP
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Scientific Director, Computational Chemistry
San Diego, California, United States
$218k-$298k/yr OnsiteFull Time
8+ YOEAdvanced degree plus 8+–12+ years computational chemistry drug discovery experience, leadership experience, expertise in molecular modeling, SBDD, cheminformatics, AI/ML, cloud/HPC workflows, and experience integrating computational methods into multidisciplinary teams.
Knime, Schrödinger, OpenEye, MOE
6d
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Technical Product Manager, Chemistry IT Systems
Spring House or San Diego or Beerse or La Jolla
$102k-$177k/yr HybridFull Time
5+ YOEBachelor’s degree in chemistry, life science, or data science required; graduate degree preferred. Requires 5+ years in pharmaceutical molecular discovery, database management, and scientific IT or informatics delivery.
KNIME, Pipeline Pilot, Schrödinger, BIOVIA, Revvity, OpenEye, ChemAxon, RDKit, Oligokit, Spotfire, ETL, Human-Computer Interaction (HCI)