12 nextflow jobs at 7 companies in Boston, MA

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Bioinformatics Leader
Boston or London or Lyngby or New York
$200k-$230k/yr HybridFull Time
ZS
ZS: Global management consulting and technology firm for healthcare and life sciences.
Advanced degree (PhD/Master’s) or equivalent experience; deep proficiency with Python, R, Nextflow, Snakemake; cloud compute experience; domain expertise in genomics/transcriptomics; experience with patient-level multimodal data and client-facing consulting.
Python, R, Nextflow, Snakemake
2w
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Senior Bioinformatics Scientist
Boston, Massachusetts, United States
OnsiteFull Time
Cellular Intelligence
Cellular Intelligence: An AI-native TechBio building foundation models of cell signaling to advance regenerative medicine and therapeutic discovery.
3+ YOEPhD or equivalent experience preferred,3+ years developing bioinformatics methods and pipelines for single-cell/spatial transcriptomics; strong Python and/or R skills; experience with Nextflow or Snakemake, containers, version control, and applying LLMs; mentorship experience.
Python, R, Nextflow, Snakemake, LLMs
1mo
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Senior Scientist, Computational Biology - Contract
Somerville, Massachusetts, United States
$74-$80/hr OnsiteContract
Tessera Therapeutics
Tessera Therapeutics: Develops gene writing technology to treat and cure diseases.
5+ YOEPhD (5+ yrs) or MS (10+ yrs) or BS (12+ yrs); broad genome editing and off-target discovery knowledge; NGS data and QC; developing and troubleshooting NGS pipelines in cloud; Nextflow/Dagster; AWS, version control, and software development best practices.
Nextflow, Dagster, AWS, NGS, CI/CD, AI agents
1mo
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Computational Biologist, Tree of Life
Boston or London
OnsiteFull Time
Cultivarium
Cultivarium: Developing tools to engineer non-model microorganisms for research.
Master's in computational biology or related; authorized to work in the U.K.; experience with population- and comparative-genomics at population scale using tools like GATK, bcftools, vcftools, PLINK, ANGSD, scikit-allel; pipelines (Nextflow, Snakemake); Python/R, Biopython/Bioconductor/pandas, and Git; familiarity with organellar genomics.
GATK, bcftools, vcftools, PLINK, ANGSD, scikit-allel, Nextflow, Snakemake, Python, R, Biopython, Bioconductor, pandas, Git, ESM, Evo, Nucleotide Transformer, AWS, Google Cloud, Azure
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Postdoctoral Research Fellow
Charlestown, Massachusetts, United States
$70k-$72k/yr OnsiteFull Time
Mass General Brigham: Provides integrated medical care, research, and clinical training services.
Ph.D. (or near completion) in a quantitative discipline; proficiency in Python and R; publication record; strong communication, independent and collaborative research skills; experience with multi-modal omics, ML, cloud/workflow tools preferred.
Python, R, Nextflow, Snakemake
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Bioinformatician - Open Rank
Worcester, Massachusetts, United States
$50k-$110k/yr OnsiteFull Time
UMass Chan Medical School
UMass Chan Medical School: A public academic health sciences center and medical school.
0+ YOEDesign and implement bioinformatics pipelines, analyze large genomics/proteomics datasets, develop custom scripts/databases, and collaborate with PIs; degrees from BS to Master's and 0–5 years research experience depending on rank.
Perl, C++, R, MySQL, Java, C/C++, shell, Python, Matlab, SQL, Nextflow, Snakemake, SAM/BAM/CRAM, Parquet, HDF5, AWS, HTML/CSS, JS, Django, Go, Rust, NumPy, pandas, polars, matplotlib, Jupyter, GitHub, Linux
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Computational Biologist
Worcester or Massachusetts or United States
$80k-$90k/yr OnsiteFull Time
UMass Chan Medical School
UMass Chan Medical School: A public medical school providing health education and research.
1+ YOEMaster's required (PhD preferred), 1-3 years related experience, strong proficiency in R or Python, statistical modeling, data visualization, Unix/Linux and HPC/cloud experience, familiarity with genomics and multi-omic analysis.
R, Python, Unix, Linux, HPC, Docker, Singularity, Snakemake, Nextflow
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Senior Data Platform Engineer
South San Francisco or Cambridge or Waltham or Rockville or San Francisco
$158k-$263k/yr HybridFull Time
GSK
GSKLondon Stock Exchange: GSK: Develops and manufactures innovative vaccines and specialty medicines.
8+ YOEBachelor’s degree in CS/Engineering or 8+ years' equivalent experience; proficiency in Python, public cloud (AWS/Azure/GCP), DevOps/CI-CD practices, and experience delivering cloud-native data platform solutions.
Python, R, bash, Spark, Nextflow, k8s, gcloud cli, Azure, GCP, AWS
2mo
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Technician, Sequencing & Bioinformatics - Genome Core (Relocation Assistance Available!)
Cambridge, Massachusetts, United States
$65k-$90k/yr OnsiteFull Time
Whitehead Institute
Whitehead Institute: Conducts basic biomedical research to improve human health.
3+ YOEBS in molecular biology, bioinformatics, or related field; 3+ years; sequencing platforms exp; single-cell exp; NGS pre-processing tools; Linux/Unix; Python; LIMS/SQL; strong communication.
Trimmomatic, MultiQC, Samtools, CellRanger, Snakemake, Nextflow, Git, Python, Linux/Unix
1mo
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Bioinformatician - Open Rank
Worcester, Massachusetts, United States
OnsiteFull Time
UMass Chan Medical School
UMass Chan Medical School: Public medical school providing education and biomedical research.
0+ YOEOpen-rank: BS or MS in CS/related field; 0–5 years depending on level. Strong programming/scripting (Python, Perl, C/C++, Java, shell), Linux, R, SQL, biostatistics, pipeline and NGS data experience, and strong communication.
Perl, C++, R, MySQL, Java, C, shell, Python, Matlab, SQL, Nextflow, Snakemake, SAM/BAM/CRAM, Parquet, HDF5, AWS, HTML, CSS, JS, Django, NumPy, pandas, polars, matplotlib, Jupyter, Linux, GitHub
2mo
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Computational Biologist
Worcester, Massachusetts, United States
OnsiteFull Time
UMass Chan Medical School
UMass Chan Medical School: Public medical school providing education and biomedical research.
1+ YOEMaster’s degree in a quantitative field; 1-3 years experience; strong R/Python; knowledge of linear/mixed models and ML; Unix/Linux HPC/cloud experience.
Docker, Singularity, Snakemake, Nextflow, R, Python
1mo
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Postdoctoral Research Fellow
Charlestown, Massachusetts, United States
$70k-$72k/yr OnsiteFull Time
Mass General Brigham: Integrated healthcare system providing patient care and medical research.
Ph.D. (or near completion) in a quantitative field; proficiency in Python and R; track record of peer-reviewed publications; strong communication, independent research, and collaboration skills; experience with multi-modal omics and ML preferred.
Python, R, Nextflow, Snakemake