12 nextflow jobs at 12 companies in California
3w
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Bioinformatics Engineer
San Jose, California, United States
HybridFull Time
3+ YOEBachelor's degree in bioinformatics/computational biology/computer science, 3+ years experience, Nextflow workflow development, Python/Bash scripting, Docker/Kubernetes, AWS experience, testing and documentation skills.
Nextflow, Python, Bash, Docker, Kubernetes, AWS EC2, AWS S3, AWS Batch, AWS Lambda, GitHub, Terraform, CloudFormation
1mo
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Senior Scientist, Computational Biology
South San Francisco or Seattle or London
$136k-$170k/yr OnsiteFull Time
5+ YOEPhD in a quantitative biology field, 5+ years industry/applied research, deep single-cell RNA‑seq and Perturb‑seq expertise, experience integrating large-scale datasets, production workflow development (Nextflow), Docker, AWS, Python (numpy, pandas, scanpy, scikit-learn), Unix, and GitHub.
Nextflow, Docker, AWS, Python, numpy, pandas, scanpy, scikit-learn, Unix, GitHub
2mo
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Computational Biologist
Palo Alto, California, United States
OnsiteFull Time
3+ YOEPhD in Bioinformatics/Computational Biology with 3+ years of industry experience; extensive RNA-seq analysis and pipelines.
Python, R, Scanpy, Pandas, NumPy, DESeq2, ggplot2, Snakemake, Nextflow, Git
1mo
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Computational Scientist, Lung Transplant Immunology
San Francisco, California, United States
$64k-$195k/yr OnsiteFull Time
5+ YOEAdvanced computational/statistical skills for end-to-end analysis of multimodal genomic datasets; strong R and Python proficiency; experience with reproducible workflows, HPC/cloud environments, and publication record in high-dimensional modalities.
R, Bioconductor, Seurat, Python, scanpy, anndata, scikit-learn, pandas, Linux, SLURM, Git, GitHub, conda, mamba, renv, Nextflow, Snakemake, Microsoft Visual Studio, AWS, GCP, UCSF Wynton, AWS HealthOmics
1d
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Open Source Research Software Engineer: Computational Infrastructure (0652) Job #87957 - Berkeley Institute for Data Science (BIDS)
Berkeley, California, United States
$102k-$190k/yr OnsiteFull Time
Advanced Python and software engineering skills; HPC, containerization, workflow tools, git/GitHub Actions, open source community experience; ability to collaborate with interdisciplinary researchers.
Python, SLURM, Docker, Apptainer, Singularity, Kubernetes, Snakemake, CWL, Dask, Nextflow, git, GitHub Actions, JupyterHub, Jupyter, Scientific Python, R
1mo
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Principal Software Engineer
South San Francisco, California, United States
$220k-$275k/yr HybridFull Time
10+ YOE10+ years software engineering experience; production cloud infrastructure (AWS preferred), Kubernetes, Terraform, Python/Go/Java; experience designing platforms, mentoring engineers, and shipping production software.
Claude Code, Cursor, AWS, GCP, Azure, Kubernetes, Terraform, Python, Go, Java, Groovy, Helm, Nextflow, WDL, Django, React, Airflow, Argo, Temporal, Dagster, LIMS, MCP servers
2w
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Bioinformatics Scientist/Biostatistician Contractor
Menlo Park, California, United States
$75-$140/hr HybridContract, Full Time
3+ YOEMaster's (PhD preferred) in quantitative field, 3+ years analyzing NGS data, coding in R or Python, experience with bcftools/samtools/bedtools/plink, cloud (AWS/GCP), Linux/shell, and genomic databases.
R, Python, bcftools, samtools, bedtools, plink, Nextflow, AWS, GCP, Linux, shell scripting, UCSC, NCBI, dbSNP, Clinvar, Ensembl
2w
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Senior Bioinformaticist - Information Services (Hybrid Role)
San Diego, California, United States
$53-$73/hr HybridFull Time
Master's degree and senior bioinformatics experience processing NGS data (BCL/FASTQ→alignment→variant calling→annotation), building automated pipelines, Unix/Linux proficiency, scripting (Python/Ruby/Perl/Bash), workflow tools, and HPC/cloud experience.
Dragen, BWA, GATK, DeepVariant, Samtools, bcftools, Picard, Annovar, VEP, Ruby, Python, Perl, Bash, Nextflow, Snakemake, WDL, Cromwell, Unix/Linux
2mo
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Senior Scientist, Bioinformatics
San Carlos, California, United States
$109k-$149k/yr OnsiteFull Time
2+ YOELead bioinformatics for clinical biomarker analysis; oncology/immunology background; strong programming (R/Python); PhD; willing to work in San Carlos, CA; US citizen/green card.
R, Python, Linux, Git, Conda, Snakemake, Nextflow
3w
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Scientist II, Field Applications Bioinformatics Support
Menlo Park, California, United States
$112k-$168k/yr HybridFull Time
2+ YOEMSc/PhD in life sciences or bioinformatics,2+ years bioinformatics/support experience,experience with high-throughput sequencing data,pipeline tools,Unix,bash,Python,R,customer-facing support and travel readiness.
SMRT Link, bash, Python, R, WDL, snakemake, nextflow, Salesforce, Unix
6d
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Director Data AI & Analytics
Irvine, California, United States
$155k-$216k/yr HybridFull Time
10+ YOE5+ Mgmt10+ years leading data and analytics with 5+ years in regulated life sciences; BS/BA in relevant field; enterprise data platform, MLOps, bioinformatics, GxP/CSV knowledge; people management experience.
Databricks, Snowflake, BigQuery, Azure, AWS, Spark, DBT, Airflow, Prefect, Kafka, EventHub, Power BI, Tableau, MLflow, W&B, SageMaker, Azure ML, vector DBs, RAG, Nextflow, Snakemake, CWL, WDL, GATK, HPC, containers, Collibra, Alation, Atlan, PAS-X, ETQ, Veeva, LabWare, Benchling, SAP, Oracle, OSI PI, AVEVA
1d
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Open Source Research Software Engineer: Computational Infrastructure (0652) Job #87957 - Berkeley Institute for Data Science (BIDS)
Berkeley, California, United States
$102k-$190k/yr OnsiteFull Time
Advanced Python and software engineering skills, HPC and workflow system experience, containerization and CI knowledge, open source community participation, strong communication, and bachelor's degree or equivalent.
Python, SLURM, Docker, Apptainer, Singularity, Kubernetes, Snakemake, CWL, Dask, Nextflow, git, GitHub Actions, JupyterHub, Scientific Python, R, Project Jupyter