5 nextflow jobs at 3 companies in Denver, CO

6d
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Data Analyst
Boulder, Colorado, United States
$100k-$150k/yr OnsiteFull Time
Alta Resource Technologies
Alta Resource Technologies: Uses synthetic biology to extract and refine critical minerals.
3+ YOEExpertise in frequentist statistics and DOE, proficiency in Python, Nextflow or Snakemake, git, dashboard tools (Dash/Streamlit); BSc/MSc/PhD in related fields with 3+ years experience; authorized to work in the U.S.
Python, Nextflow, Snakemake, git, Dash, Streamlit, AWS, Azure, Bash, Zsh
3mo
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Technical Lead - Software Developer, Data Foundry
San Diego or San Francisco or Boston or Louisville or Indianapolis
$152k-$244k/yr OnsiteFull Time
Eli Lilly and Company
Eli Lilly and CompanyNYSE: LLY: Researches and manufactures medicines for human health.
1+ YOEDegree in a STEM field; significant scientific software development experience; proficiency in Python plus one other language, strong SQL, RESTful APIs, cloud and containerization, MLOps tooling (MLflow, W&B), and lab automation integration experience.
Python, Java, C#, Go, TypeScript, Rust, SQL, MLflow, W&B, Postgres, Redshift, Snowflake, BigQuery, Benchling, RDKit, Schrödinger, MOE, Prefect, Airflow, Nextflow, WDL, Docker, Kubernetes, Git, Linux, Bash, AWS, Azure, GCP, MCP
1mo
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Junior Data Engineer
Boulder, Colorado, United States
$90k-$120k/yr OnsiteFull Time
Alta Resource Technologies
Alta Resource Technologies: Uses synthetic biology to extract and refine critical minerals.
1+ YOEBachelor's degree or equivalent experience, 1+ years industry experience, proficiency in Python and SQL, experience with data pipelines and ETL, familiarity with cloud platforms (AWS/S3) and data governance (FAIR). US citizenship required.
Python, SQL, Nextflow, Apache Airflow, Prefect, AWS, S3, Spark, dbt, Great Expectations, Apache Kafka, Spark Streaming, Git, CI/CD, OpenMetadata, DataHub, Dublin Core
1mo
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Scientist I, Computation Protein Design
Boulder, Colorado, United States
$140k-$175k/yr OnsiteFull Time
Alta Resource Technologies
Alta Resource Technologies: Uses synthetic biology to extract and refine critical minerals.
1+ YOEPh.D. (1–3 years) or M.S. (6+ years) in computational biology or related field; hands-on experience with protein foundation models, ML model fine-tuning, Python and modern ML frameworks, molecular modeling tools, HPC/GPU computing; US citizenship required.
BoltzGen, ESM, OpenFold, ESM-2, ESM-3, ProteinMPNN, RFdiffusion, AlphaFold, Rosetta, PyMOL, Chimera, Python, PyTorch, TensorFlow, JAX, Nextflow, Snakemake, AWS, GCP, Azure, Docker, Singularity, Dask, Ray, Spark
2w
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Bioinformatics Analyst I
Denver, Colorado, United States
$70k-$80k/yr RemoteFull Time
Theiagen Genomics
Theiagen Genomics: Providing bioinformatics software and training for pathogen genomic surveillance.
Bachelor's degree in a relevant field, experience applying bioinformatics tools to NGS data, familiarity with genomic epidemiology, strong communication, and ability to work collaboratively with mentorship.
Terra.bio, Galaxy, Nextflow, WDL, Snakemake, NGS, MLST, UNIX, Linux