New York City • 50 milesRemote · Hybrid · Onsite · Field · All Environments
New York City • 50 milesRemote · Hybrid · Onsite · Field · All Environments
New York City • 50 milesRemote · Hybrid · Onsite · Field · All Environments
New York City • 50 milesRemote · Hybrid · Onsite · Field · All Environments
9 nextflow jobs at 5 companies in New York City, NY
2mo
Save
Mark Applied
Hide
Bioinformatics Leader
Boston or London or Lyngby or New York
$200k-$230k/yr HybridFull Time
Advanced degree (PhD/Master’s) or equivalent experience; deep proficiency with Python, R, Nextflow, Snakemake; cloud compute experience; domain expertise in genomics/transcriptomics; experience with patient-level multimodal data and client-facing consulting.
Python, R, Nextflow, Snakemake
2mo
Save
Mark Applied
Hide
Senior Bioinformatics Programmer
New York, New York, United States
$85k-$105k/yr OnsiteFull Time
3+ YOEM.Sc. plus ≥3 years' experience in bioinformatics or related field; strong Python/R/shell skills; proficiency with Nextflow, Docker/Singularity, Unix/Linux, NGS tools (BWA, GATK, Picard, samtools, bcftools), SQL, cloud (GCP/AWS), and experience with NGS data and clinical genomics.
Nextflow, Python, R, Shell scripting, Django, Docker, Singularity, BWA, GATK, Picard, samtools, bcftools, FASTQ, BAM, VCF, SQL, GitHub, HTML, CSS, JavaScript, TypeScript, GCP, AWS, Unix/Linux
2mo
Save
Mark Applied
Hide
Principal Bioinformatician
Somerset or United States
$146k-$192k/yr HybridFull Time
5+ YOELead translational analyses integrating multi‑omics and clinical datasets; build scalable bioinformatics pipelines; PhD (5+ yrs) or MS (8+ yrs) in relevant field; expertise in R/Python, Linux, workflow managers, and cloud platforms.
R, Python, Linux/Unix, Snakemake, Nextflow, WDL, AWS, GCP, Azure
1mo
Save
Mark Applied
Hide
Postdoctoral Fellow-MSH-30001-337
New York or United States
$73k-$80k/yr OnsiteFull Time
Ph.D. in a relevant field; experience with single-cell/spatial genomics and sequencing-based assay development; proficiency in R and Python; familiarity with single-cell analysis tools; strong publication record and communication skills.
R, Python, Seurat, Scanpy, ArchR, Signac, Cell Ranger, Snakemake, Nextflow
1mo
Save
Mark Applied
Hide
Postdoctoral Fellow-MSH-30001-337
New York, New York, United States
$73k-$80k/yr OnsiteFull Time
Ph.D. required in a related field; experience with spatial and single-cell genomic methods and NGS library prep preferred; proficiency in R and Python; familiarity with single-cell analysis tools; strong problem-solving and publication record.
R, Python, Seurat, Scanpy, ArchR, Signac, Cell Ranger, Snakemake, Nextflow
1mo
Save
Mark Applied
Hide
Bioinformatician II - Windreich Department of AI & Human Health
New York or United States
$66k-$100k/yr OnsiteFull Time
2+ YOEM.S. in bioinformatics or related field (Ph.D. preferred), 2+ years post-graduate research experience, proficiency in R/Python/shell, experience with large genomic and multi-omics datasets and reproducible pipelines.
MatLab, R, BioConductor, Perl, C++, Python, shell scripting, RStudio, JupyterLab, PLINK, SAIGE, Regenie, BOLT-LMM, GCTA, LDSC, KING, bcftools, samtools, vcftools, Git, GitHub, AWS, DNAnexus, APIs, WDL, Nextflow, EHR, LLMs
1w
Save
Mark Applied
Hide
Sr. Bioinformatics Developer
New York City, New York, United States
$85k-$135k/yr OnsiteFull Time
5+ YOEMaster's degree in bioinformatics, computational biology, computer science, or related field; 5+ years developing genomic bioinformatics pipelines; Python, SQL, Git, cBioPortal, VCF, BAM, XML, and clinical genomics expertise.
Foundation Medicine, Guardant Health, Tempus, PACT, VCF, XML, BAM, cBioPortal, OMOP-CDM, Tableau, Git, Python, SQL, MySQL, PostgreSQL, GitHub, Nextflow, Snakemake, Apache Airflow, Docker, Kubernetes, Java, AWS, GCP, Azure, scikit-learn, TensorFlow, PyTorch, R, pandas, scipy, OncoKB, CIViC, ClinVar
1mo
Save
Mark Applied
Hide
Bioinformatician II - Windreich Department of AI & Human Health
New York, New York, United States
$66k-$100k/yr OnsiteFull Time
2+ YOEM.S. in bioinformatics or related field required (Ph.D. preferred). Minimum 2+ years post-grad research experience (4+ preferred). Strong genetics and statistical analysis skills; proficiency in R/Python/shell and experience with large genomic datasets, cloud, workflow tools, and version control.
MATLAB, R, Bioconductor, Perl, C++, Python, shell scripting, PLINK, SAIGE, Regenie, BOLT-LMM, GCTA, LDSC, KING, bcftools, samtools, vcftools, RStudio, JupyterLab, EHR, AWS, DNAnexus, APIs, WDL, Nextflow, Git, GitHub
2mo
Save
Mark Applied
Hide
Senior Software Engineer, Genomics
New York, New York, United States
$160k-$200k/yr OnsiteFull Time
8+ YOEB.S. in CS or related field; 8+ years software engineering experience building production, data-intensive systems; expertise with Python, genomics/bioinformatics data, distributed workflows, databases, containerization, ML frameworks, and SDLC/CI-CD practices.
HumanBase, Python, HDF5, Parquet, PyArrow, xarray, Celery, Dask, SLURM, Nextflow, Snakemake, PostgreSQL, MySQL, Docker, Kubernetes, scikit-learn, PyTorch, AWS