200 computational research scientist jobs at 66 companies in San Jose, CA
1mo
Save
Mark Applied
Hide
Beyond Moore Computational Research Scientist
Berkeley or California
$95k-$227k/yr HybridFull Time, Temporary
3+ YOEPhD in computing discipline, minimum 3 years postdoctoral or equivalent research experience, expertise in processor/accelerator design, SPICE/Verilog, CAD/EDA tools, C++/Python, FPGA flows, and record of publications.
Spice, Verilog, C++, Python, Perl, UNIX shell scripts, make, configure, CHISEL, PyMTL, FPGA, CAD, EDA, ASIC
1mo
Save
Mark Applied
Hide
Research Scientist, Life Sciences (Computational)
San Francisco, California, United States
$300k-$320k/yr HybridFull Time
PhD or equivalent industry research experience in computational biology or related field; track record of end-to-end computational biology research; proficiency with Linux, cloud compute, and scientific programming; strong communication with biologists and ML researchers.
Claude, Linux
1mo
Save
Mark Applied
Hide
Research Scientist - Computational Neuroscience
Emeryville, California, United States
$90k-$200k/yr HybridFull Time
Ph.D. or equivalent in a relevant field; experience programming in Python; familiarity with Jax, Pytorch, NumPy, SciPy; research experience in computational/theoretical neuroscience; data analysis, statistics, or ML experience; ability to work independently and communicate results.
Python, Jax, Pytorch, NumPy, SciPy, C++, Linux, Git, high-performance computing environments
1w
Save
Mark Applied
Hide
Senior Principal Research Scientist, Computational Chemistry
South San Francisco, California, United States
$196k-$242k/yr HybridFull Time
9+ YOEPhD in computational chemistry or related field, 9+ years of pharmaceutical or biotechnology experience, expertise in computational drug discovery, programming, data analysis, machine learning, and drug design software.
Schrödinger, MOE, OpenEye, Machine Learning, Artificial Intelligence, Molecular Dynamics, Quantum Mechanics, Cheminformatics, Programming, Scripting, Statistics, Data Analysis
1mo
Save
Mark Applied
Hide
Research Scientist, Applied Science
Palo Alto or Paris or Abu Dhabi
$175k-$270k/yr OnsiteFull Time
PhD (or equivalent) in CS/AI/Computational Biology, proven publication record, experience translating ML research to biology, computational discovery experience, collaboration with experimental scientists, and software engineering best practices.
AlphaFold2, AlphaFold3, RosettaFold
1mo
Save
Mark Applied
Hide
Computational Scientist, Lung Transplant Immunology
San Francisco, California, United States
$64k-$195k/yr OnsiteFull Time
5+ YOEAdvanced computational/statistical skills for end-to-end analysis of multimodal genomic datasets; strong R and Python proficiency; experience with reproducible workflows, HPC/cloud environments, and publication record in high-dimensional modalities.
R, Bioconductor, Seurat, Python, scanpy, anndata, scikit-learn, pandas, Linux, SLURM, Git, GitHub, conda, mamba, renv, Nextflow, Snakemake, Microsoft Visual Studio, AWS, GCP, UCSF Wynton, AWS HealthOmics
3w
Save
Mark Applied
Hide
Scientist, Computational Biology
Menlo Park, California, United States
$130k-$150k/yr HybridFull Time
Ph.D. or Master's in quantitative biosciences with relevant experience; hands-on biobank and multi-omic analysis; proficiency in Python/R, version control, cloud biobank environments; strong statistical and epidemiological skills.
Python, R, Git, DNAnexus, Terra, AWS, GCP
1mo
Save
Mark Applied
Hide
Senior Scientist, Computational Biology
South San Francisco or Seattle or London
$136k-$170k/yr OnsiteFull Time
5+ YOEPhD in a quantitative biology field, 5+ years industry/applied research, deep single-cell RNA‑seq and Perturb‑seq expertise, experience integrating large-scale datasets, production workflow development (Nextflow), Docker, AWS, Python (numpy, pandas, scanpy, scikit-learn), Unix, and GitHub.
Nextflow, Docker, AWS, Python, numpy, pandas, scanpy, scikit-learn, Unix, GitHub
2w
Save
Mark Applied
Hide
Scientist II/Senior Scientist, Computational Biophysics
Cambridge or London or San Francisco
$141k-$218k/yr OnsiteFull Time
PhD or equivalent experience in computational biophysics/chemistry, deep hands-on MD and free-energy expertise, experience with OpenMM/OpenFE, ability to define and validate biophysics workflows for drug discovery.
OpenMM, OpenFE, LLM
2w
Save
Mark Applied
Hide
Scientist, Computational Biology
Palo Alto, California, United States
$135k-$187k/yr HybridFull Time
0+ YOEPhD in relevant field, 0–4 years postdoctoral/professional research experience, hands-on single-cell/perturbational/multi-omic analysis, expertise in perturb-seq or microglia single-cell analysis, Python proficiency, reproducible workflows, strong collaboration and communication; onsite minimum 3 days/week.
Python
3d
Save
Mark Applied
Hide
Research Scientist, Google Research
Mountain View, California, United States
$174k-$252k/yr OnsiteFull Time
2+ YOEPhD in computer science or related field, 2 years leading a research agenda, core ML model development, LLM training and generative models, publications, and 2 years coding experience preferred.
LLM, Gemini, CVPR, ICCV, NeurIPS, ICML, ICLR
1w
Save
Mark Applied
Hide
Staff Computational Scientist (Electric Grid Simulations
Mountain View or United States or United Kingdom or Chile or New Zealand or Australia or Brazil
$166k-$259k/yr HybridFull Time
6+ YOEMaster's or PhD in Electrical Engineering, 6+ years in power systems or power electronics modeling and simulation, programming experience, and expertise in power systems, numerical methods, and large-scale networks.
Python, Java, C, C++, JAX, Julia, Machine Learning
1w
Save
Mark Applied
Hide
Staff Computational Scientist (Electric Grid Simulations
Mountain View or United States or United Kingdom or Chile or New Zealand or Australia or Brazil
$166k-$259k/yr HybridFull Time
6+ YOEMaster's or PhD in Electrical Engineering; 6+ years in power systems or power electronics modeling and simulation; programming in Python, Java, C/C++, or similar; expertise in power systems and numerical methods.
Python, Java, C, C++, JAX, Julia, Machine Learning
5d
Save
Mark Applied
Hide
Research Scientist
Presidio, California, United States
OnsiteFull Time
Ph.D. in a related AI or computer science field; top-tier publications; expert Vision-Language Model knowledge, Python, PyTorch, multimodal architectures, and transformer-based computer vision.
Vision-Language Model (VLM), Qwen-VLM, PaliGemma2, Python, PyTorch, CVPR, ICCV, ECCV, NeurIPS, ICLR, ACL
2mo
Save
Mark Applied
Hide
Computational Materials Scientist - Postdoctoral Researcher
Livermore, California, United States
$123k/yr OnsiteFull Time
PhD in materials-related field, ability to obtain DOE Q-level clearance (U.S. citizenship required), expertise in CALPHAD, ICME, uncertainty quantification, and scientific software development; experience with thermodynamic tools and strong publication record.
Thermo-Calc, Pandat, FactSage, PyCalphad, Thermochimica, OpenCalphad, High Performance Computing, Materials Acceleration Platform
3w
Save
Mark Applied
Hide
Scientist/Sr. Scientist, Computational Chemistry
San Francisco, California, United States
OnsiteFull Time
3+ YOEPhD-preferred computational chemist with 3+ years in pharma/biotech, hands-on SBDD and ligand-based design, experience with cheminformatics, AI/ML molecular design, Python and RDKit, and cross-functional collaboration.
Schrödinger, MOE, CCDC tools, ChemAxon, KNIME, Pipeline Pilot, RDKit, DataWarrior, Spotfire, AlphaFold, Python
3mo
Save
Mark Applied
Hide
Research Scientist
San Jose, California, United States
OnsiteFull Time
PhD in Computer Science/AI or related field; strong publication record; experience in Generative AI, diffusion models, large-scale model training; good communication and teamwork.
Python, PyTorch, TensorFlow, Machine Learning Frameworks
2w
Save
Mark Applied
Hide
Research Scientist Graduate (Computational Imaging-PICO) - 2027 Start (PhD)
San Jose, California, United States
OnsiteFull Time
PhD in CS/ECE/Imaging or related, strong foundation in image processing/computational photography/ML, proficiency with PyTorch or TensorFlow and Python/MATLAB, familiarity with C/C++, and hands-on hardware experimentation skills.
PyTorch, TensorFlow, Python, MATLAB, C, C++
19h
Save
Mark Applied
Hide
Research Scientist- Robotics AI
Sunnyvale or Pittsburgh or Cambridge
$165k-$185k/yr HybridFull Time
3+ YOEPh.D. in computer science, robotics, or related field, or master's degree with 2+ years' industry experience; 3+ years' AI R&D or equivalent graduate research; programming and ML framework expertise.
Python, C++, Rust, TensorFlow, PyTorch, PPO, DQN, DDPG, NeRF, CVPR, ICRA, IROS, RSS, NeurIPS, CoRL
1w
Save
Mark Applied
Hide
Computational Clinical Scientist II, Clinical Bioinformatics
Redwood City, California, United States
$132k-$166k/yr HybridFull Time
2+ YOEM.S. or Ph.D. in bioinformatics, biology, data science, or related field; 2+ years of pharmaceutical or biotech bioinformatics experience; R or Python programming and clinical data analysis expertise.
R, Python, GATK, Salmon, OncoKB, VEP, IDE, version control systems, GDC, TCGA, clusters, containers, cloud computing
Explore Jobs
Expand Your Job Search
Top Cities Near San Jose for Computational Research Scientist
- Computational Research Scientist jobs in San Francisco, CA
- Computational Research Scientist jobs in Oakland, CA
- Computational Research Scientist jobs in Fremont, CA
- Computational Research Scientist jobs in Hayward, CA
- Computational Research Scientist jobs in Salinas, CA
- Computational Research Scientist jobs in Sunnyvale, CA
- Computational Research Scientist jobs in Concord, CA
- Computational Research Scientist jobs in Santa Clara, CA
- Computational Research Scientist jobs in Berkeley, CA
- Computational Research Scientist jobs in Antioch, CA
- Computational Research Scientist jobs in Richmond, CA
- Computational Research Scientist jobs in Daly City, CA
- Computational Research Scientist jobs in San Mateo, CA
- Computational Research Scientist jobs in San Leandro, CA
- Computational Research Scientist jobs in Livermore, CA
- Computational Research Scientist jobs in Tracy, CA
- Computational Research Scientist jobs in Redwood City, CA
- Computational Research Scientist jobs in Mountain View, CA
- Computational Research Scientist jobs in Pleasanton, CA
- Computational Research Scientist jobs in Alameda, CA