55 deep learning scientist jobs at 31 companies in Middleton, MA
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Machine Learning Scientist
Somerville or Cambridge
$132k-$209k/yr OnsiteFull Time
3+ YOEPhD in computer science, computational biology, or related field; or master's with 3+ years or bachelor's/master's with 6+ years relevant ML research. Requires deep learning, biological data, perturbation modeling, cloud computing, and MLOps experience.
transformer, diffusion, VAE, AWS, GCP, MLOps, Geneformer, scGPT, scFoundation
9h
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Machine Learning Scientist
Somerville or Cambridge
$132k-$209k/yr OnsiteFull Time
3+ YOEPhD in computer science, computational biology, or related field; or master's degree with 3+ years or bachelor's/master's with 6+ years relevant ML research. Requires deep learning, generative AI, biological data, perturbation modeling, cloud, and MLOps experience.
transformer, diffusion, VAE, CRISPR, Perturb-seq, Geneformer, scGPT, scFoundation, AWS, GCP, MLOps, LLM
1w
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Senior Machine Learning Scientist
Seattle or Boston or Scottsdale or Vietnam or Europe
$160k-$256k/yr HybridFull Time
8+ YOEPhD in computer science or related field, 8+ years of experience for the senior level, expertise in LLMs, computer vision, GenAI, Python, C/C++, deep learning frameworks, and robotics systems.
Python, C, C++, TensorFlow, PyTorch, Keras, ROS
2mo
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Principal Machine Learning Scientist
Cambridge, Massachusetts, United States
$124k-$186k/yr OnsiteFull Time
Ph.D. in a relevant computational/engineering life-science field, deep expertise in ML for biomolecules, strong Python programming, experience with large biochemical/structural datasets, excellent communication and scientific rigor.
Python, Molecular Dynamics, Rosetta, random forests, deep learning, neural networks
2mo
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Machine Learning Scientist – Clinical Prediction
Boston or San Diego or United States
$148k-$186k/yr HybridFull Time
3+ YOEMS in chemistry/bio/chemical engineering or PhD/equivalent; 3+ years relevant experience; strong Python and deep-learning fine-tuning skills; clinical dataset experience; data science and engineering best practices; familiarity with Docker, CUDA, Kubernetes, and Weights & Biases.
Python, Docker, CUDA, Kubernetes, Weights & Biases, HPC
2mo
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Principal Machine Learning Scientist
Cambridge, Massachusetts, United States
$124k-$186k/yr OnsiteFull Time
5+ YOEPhD in Computational Chemistry/Biology or related field; deep ML for biomolecules; large datasets; Python; strong communication.
Python, Deep Learning, Molecular Dynamics, Rosetta, NLP, Neural Networks
2mo
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Senior Research Scientist, Machine Learning (BioFM)
Toronto or Cambridge
$175k-$200k/yr HybridFull Time
PhD (or equivalent) in a quantitative field, deep expertise in deep learning and foundation models for biological sequences, track record building large-scale models (PyTorch), experience with massive -omics datasets, strong communication and mentorship skills.
PyTorch, GCP
1mo
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Applied Scientist, AI & Deep Learning (mid to senior level)
Cambridge, Massachusetts, United States
$120k-$220k/yr HybridFull Time
3+ YOEU.S. citizen able to obtain security clearance, Bachelors in CS or related field required, 3+ years building ML/AI systems (or graduate degree), Python and Linux proficiency, strong math and communication skills.
Python, Linux
3w
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Scientist II / Senior ML Scientist, Cofolding and Structure-Aware ML
Cambridge or London or San Francisco
$228k-$358k/yr OnsiteFull Time
PhD or equivalent experience in ML/computational biology/chemistry; hands-on deep learning for molecular and protein structure; experience with contrastive/self-supervised methods and DEL or related datasets; practical PyTorch or JAX experience.
PyTorch, JAX, AlphaFold
4d
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Postdoctoral Scientist – Multimodal Representation Learning for Predictive Biology
Cambridge or Spring House or Beerse or Madrid
$92k-$111k/yr HybridFull Time, Contract
Ph.D. completed within 3 years or expected within 6 months; expertise in AI/ML for biological applications, multimodal modeling, deep learning, biological data, and programming with Python and AI frameworks.
Transformers, CNNs, PyTorch, TensorFlow, Python
4d
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Postdoctoral Scientist – Multimodal Representation Learning for Predictive Biology
Cambridge or Spring House or Beerse or Madrid
$92k-$111k/yr HybridFull Time, Contract
Ph.D. completed within 3 years or due within 6 months; expertise in AI/ML, biological data, multimodal modeling, deep learning, and computer vision; Python and PyTorch or TensorFlow proficiency required.
Python, PyTorch, TensorFlow, Transformers, CNNs
4d
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Senior ML Data Scientist, Health Sensing
United States or San Francisco or San Diego or Boston or New York City
$147k-$203k/yr RemoteFull Time
3+ YOEPhD in a relevant technical field, 3+ years of industry machine learning and data science experience, and 5+ years of Python and SQL programming. Requires expertise in deep learning, time-series analysis, signal processing, and model commercialization.
Python, SQL
2mo
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Visiting Scientist
Boston, Massachusetts, United States
$155k-$185k/yr OnsiteFull Time
PhD required; strong background in machine learning/deep learning and MRI; experience with Python and modern ML frameworks; track record of peer‑reviewed publications and working with large imaging datasets.
Python, PyTorch, TensorFlow, H200s GPUs, HPC
2mo
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Pathology Computational Scientist
Boston, Massachusetts, United States
$94k-$137k/yr OnsiteFull Time
Experience in microbiome bioinformatics and machine learning, advanced deep learning skills, Python and PyTorch experience preferred, Git and SLURM familiarity, ability to manage large biomedical datasets and contribute to publications/grants.
Python, PyTorch, Git, SLURM
3w
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Senior Applied Scientist
North Reading, Massachusetts, United States
$167k-$226k/yr OnsiteFull Time
3+ YOERequires 3+ years building machine learning models, PhD or master's degree plus 6+ years applied research, programming, deep learning, control, simulation, and real-time controller experience.
Java, C++, Python, IsaacLab, MuJoCo, Drake, R, scikit-learn, Apache Spark, MXNet, TensorFlow, NumPy, SciPy, Hadoop, MATLAB, ROS
5d
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AI Scientist — Commerce Labs
San Francisco or Burlington or Boston or New York City
$117k-$224k/yr OnsiteFull Time
Hands-on machine learning experience with Python and standard ML tooling; foundation in reinforcement learning, deep learning, optimization, causal inference, or operations research. PhD and research publications preferred.
Python, PyTorch, TensorFlow, JAX, Salesforce Commerce Cloud, Shopify, Adobe Commerce, GitHub, Google Scholar, NeurIPS, ICML, ICLR, AAAI, CVPR, RecSys, EC, EMNLP, ACL
5d
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AI Scientist — Commerce Labs
San Francisco or Burlington or Boston
$117k-$224k/yr OnsiteFull Time
Hands-on machine learning experience, Python and ML tooling proficiency, and expertise in reinforcement learning, deep learning, optimization, causal inference, or operations research. PhD and published research are preferred.
Python, PyTorch, TensorFlow, JAX, Salesforce Commerce Cloud, Shopify, Adobe Commerce, GitHub, Google Scholar, NeurIPS, ICML, ICLR, AAAI, CVPR, RecSys, EC, EMNLP, ACL
3mo
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Staff, ML Research Scientist
Waltham, Massachusetts, United States
$154k-$193k/yr OnsiteFull Time
5+ YOE5+ years in deep learning for computer vision or LLMs; Transformers, VLMs/VLAs, and Deep Reinforcement Learning; data management, training, deployment; strong communication; collaborative work.
Python, TensorFlow, PyTorch, Transformers, DL frameworks, Computer Vision, Reinforcement Learning
1mo
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Data Scientist II
San Francisco or Ottawa or Phoenix or Toronto or Los Angeles or Denver or Salt Lake City or Atlanta or Chicago or Houston or Portland or New York City or Vancouver or San Diego or Washington, D.C. or Sacramento or Jacksonville or Seattle or Mexico City or Austin or Miami or Boston or Dallas
$97k-$184k/yr HybridFull Time
3+ YOE3+ years building and deploying ML models at scale, proficiency in Python, SQL/PySpark, Spark/Databricks, experience with NLP, deep learning and generative models, BS/MS in quantitative field.
Scikit-learn, NumPy, PyTorch, Python, SQL, Apache Spark, Databricks, PySpark
3w
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Senior Data Scientist
Boston, Massachusetts, United States
$135k-$165k/yr RemoteFull Time
1+ YOEAdvanced experience building and shipping predictive models using deep learning and traditional methods; strong Python, PyTorch/TensorFlow, SQL, cloud and MLOps skills; BS/MS/PhD in related field with 1–5 years' experience.
PyTorch, TensorFlow, Python, Jupyter, Pandas, NumPy, Scikit-learn, LightGBM, XGBoost, Transformers, SQL, AWS, Azure, Google Cloud, Databricks, Docker, CI/CD
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