55 applied research scientist jobs at 26 companies in Everett, MA
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Senior Applied Scientist
North Reading, Massachusetts, United States
$167k-$226k/yr OnsiteFull Time
3+ YOERequires 3+ years building machine learning models, PhD or master's degree plus 6+ years applied research, programming, deep learning, control, simulation, and real-time controller experience.
Java, C++, Python, IsaacLab, MuJoCo, Drake, R, scikit-learn, Apache Spark, MXNet, TensorFlow, NumPy, SciPy, Hadoop, MATLAB, ROS
4w
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Senior Research Data Scientist
Boston or New York
$330k-$375k/yr HybridFull Time
10+ YOEPhD-preferred research data scientist with 10+ years applying causal inference and ML to large observational datasets; expertise in observational causal methods, communication skills, and productionizing pipelines.
Spark, Ray, SQL, Python, scikit-learn, XGBoost, LightGBM
1mo
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Research Scientist III
Bellevue or Boston
$149k-$225k/yr OnsiteFull Time
4+ YOEAdvanced degree or equivalent experience in data science/OR/applied math; 4+ years industry experience (2+ in supply chain preferred); proficiency in Python, optimization solvers, cloud deployment, and collaborative tools.
Python, Gurobi, Xpress, CPLEX, Git, Confluence, AWS, Azure, Google Cloud
1mo
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Research Scientist, Battlespace Awarenss
Waltham, Massachusetts, United States
$191k-$253k/yr OnsiteFull Time
M.S. or Ph.D. in a quantitative field; strong background in applied math, controls, estimation, scientific computing, probability; ability to prototype algorithms and implement high-performance software; strong communication skills; eligible for Top Secret/SCI.
Lattice OS
2w
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Applied Hypersonics Research Principal Scientist/Engineer
Andover, Massachusetts, United States
$118k-$140k/yr OnsiteFull Time
Advanced degree or equivalent experience in chemistry, physics, or applied engineering; extensive experimental and data analysis experience; technical leadership; peer-reviewed publications; excellent written and oral English; U.S. citizenship.
Schlieren, Pitot, PLIF, IR, UV, laser absorption, emission spectroscopy, vacuum systems, plasma technologies
14h
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Modeling & Simulation Research Scientist
Cambridge or United States
$105k-$214k/yr OnsiteFull Time
2+ YOERequires an MSc or PhD in geosciences, petroleum engineering, applied physics, or related field; 2+ years of geosciences research or technical experience; simulation tools; scientific computing; and Python, C/C++, Fortran, or MATLAB.
Python, C, C++, Fortran, MATLAB, Intersect, Visage, Petrel
1mo
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Applied Scientist, AI & Deep Learning (mid to senior level)
Cambridge, Massachusetts, United States
$120k-$220k/yr HybridFull Time
3+ YOEU.S. citizen able to obtain security clearance, Bachelors in CS or related field required, 3+ years building ML/AI systems (or graduate degree), Python and Linux proficiency, strong math and communication skills.
Python, Linux
3mo
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Lead Research Scientist - Machine Learning
Woburn, Massachusetts, United States
$174k-$220k/yr OnsiteFull Time
8+ YOEMS with 8+ years or PhD with 5+ years in applied math, physics, electrical engineering, CS, or data science; ML/AI expertise; PyTorch/TensorFlow/JAX; data science tools; Python/C/C++; ability to lead teams and obtain security clearance.
PyTorch, JAX, TensorFlow, scikit-learn, Pandas, Matplotlib, Python, C/C++
2mo
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Quantum Scientist - Applied QEC
Boston, Massachusetts, United States
$135k-$170k/yr HybridFull Time
PhD required with research experience in quantum computing; experience designing/running/analyzing experiments or simulations; strong written/verbal communication; customer collaboration; willingness to travel US/UK.
DeltaKit Software, Deltaflow
2w
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Applied AI and Machine Learning Scientist (Director)
Cambridge, Massachusetts, United States
$177k-$294k/yr HybridFull Time
9+ YOEAdvanced degree preferred; ~9+ years relevant experience; demonstrated leadership in applied AI for drug discovery; strong knowledge of LLMs, foundation models, multimodal AI, and governance; ability to prioritize use cases and drive adoption.
LLMs, foundation models, agentic systems, multimodal AI, retrieval-augmented
1mo
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Principal Scientist / Associate Director, Agentic AI Research for Materials Science
Cambridge or San Francisco
$288k-$420k/yr OnsiteFull Time
5+ YOEPhD with 5+ years post-PhD research and applied ML experience; track record building agentic systems; expertise in LLMs, reasoning, multimodal data, materials science grounding; Python proficiency; leadership and communication skills.
Python, LLMs, HPC
2w
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AI Scientist – AI-Driven Target Identification
Cambridge or Basel
$104k-$192k/yr HybridFull Time
PhD required in ML, CS, applied math, computational biology or related; strong experience in generative AI, foundation models, geometric deep learning, multimodal learning, and knowledge graphs; proficient in PyTorch and Python; research publication record.
PyTorch, Python
3w
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QSP postdoctoral scientist
Boston or Indianapolis
$58k-$123k/yr OnsiteFull Time
PhD in quantitative pharmacology/systems biology/applied math or related, experience with QSP/ODE models, virtual populations, parameter estimation; proficiency in R, Matlab/Simbiology, Python, NONMEM or Monolix; authorized to work in the US.
R, Matlab/Simbiology, Python, NONMEM, Monolix
4w
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Senior Bioinformatics Scientist
Boston, Massachusetts, United States
OnsiteFull Time
3+ YOEPhD or equivalent experience preferred,3+ years developing bioinformatics methods and pipelines for single-cell/spatial transcriptomics; strong Python and/or R skills; experience with Nextflow or Snakemake, containers, version control, and applying LLMs; mentorship experience.
Python, R, Nextflow, Snakemake, LLMs
1mo
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Applications Scientist 3
Hillsboro or Wilmington or Texas or United States
$97k-$145k/yr OnsiteFull Time
0+ YOEDegree in physics, materials science, EE, applied math or related; 0-3 years experience; optics and metrology knowledge; scripting (Matlab/Python) and data analysis a plus; able to travel up to 20% and work in fabs up to 40%.
Matlab, Python
1mo
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Senior Scientist I - Drug Metabolism
Lexington, Massachusetts, United States
$140k-$190k/yr OnsiteFull Time
4+ YOEDesign and conduct ADME/DMPK research, lead DMPK strategy, apply PK/PD and PBPK modeling, integrate DMPK with medicinal chemistry, manage CRO partnerships, mentor staff; requires relevant degree plus multi-year experience.
2w
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Senior Scientist, Antibody Repertoire Sequencing & Discovery
Worcester, Massachusetts, United States
$110k-$209k/yr OnsiteFull Time
Expertise in antibody repertoire sequencing and immunoglobulin genetics; proficiency with NGS platforms, molecular biology techniques, and antibody/DNA analysis software; experience applying computational/AI methods to antibody discovery.
PipeBio, Geneious, Sequencher, Microsoft Excel, Microsoft PowerPoint, Microsoft Word, Illumina NextSeq, Illumina MiSeq, PacBio
1mo
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(Senior) Scientist, Machine Learning
Cambridge, Massachusetts, United States
$132k-$259k/yr OnsiteFull Time
2+ YOEPh.D. (2+ yrs industry) or M.S. (6+ yrs) in ML/computational chemistry/CS/applied math; expertise in molecular ML, quantum chemistry/DFT, generative models; Python and PyTorch experience; data curation and cross-functional collaboration.
Python, PyTorch, PyTorch Geometric, DGL, RDKit, ORCA, Gaussian, Q-Chem, DFT
2mo
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Machine Learning Scientist, Applied Machine Learning and Agentic AI, Pharma R&D
New York City or Boston or Redwood City or Chicago
$100k-$160k/yr OnsiteFull Time
3+ YOEPhD required (or Masters with 3+ years), strong AI/ML, agentic AI, oncology data, Python, LangGraph preferred, multimodal data, cloud deployment, excellent communication.
Python, LangGraph, Retrieval-Augmented Generation, LLM
2w
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ML Data Scientist III ( Seattle/Provo)
Provo or Seattle or Chicago or Boston or South Bend
$100k-$140k/yr HybridFull Time
5+ YOEMaster's in CS/AI or related,5+ years in applied research or software engineering,proven conversational AI and generative AI experience,knowledge of ML/NLP and collaboration skills.
LangChain, LangGraph, MCP, ADK, A2A, Apache Spark, Databricks, Docker, Kubernetes, Azure, AWS, GCP
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