2w
Save
Mark Applied
Hide
Bioinformatics Engineer
San Jose, California, United States
HybridFull Time
3+ YOEBachelor's degree in bioinformatics/computational biology/computer science, 3+ years experience, Nextflow workflow development, Python/Bash scripting, Docker/Kubernetes, AWS experience, testing and documentation skills.
Nextflow, Python, Bash, Docker, Kubernetes, AWS EC2, AWS S3, AWS Batch, AWS Lambda, GitHub, Terraform, CloudFormation
1mo
Save
Mark Applied
Hide
Bioinformatics Engineer
Rockville, Maryland, United States
$125k-$150k/yr OnsiteFull Time
3+ YOE3+ years building production bioinformatics pipelines; proficiency with Nextflow (DSL2), RNA-seq and DNA workflows, Google Cloud Platform, Python/R, containerization (Docker/Singularity), Git, and genomic file formats and tools.
Nextflow, nf-core, Google Cloud Platform, Compute Engine, Cloud Storage, Batch, Life Sciences API, Python, R, Docker, Singularity, Git, CI/CD, FASTQ, BAM, VCF, BED, STAR, Salmon, BWA, GATK, Bismark, Cell Ranger, Seurat, Scanpy, R Shiny, Plotly, Cromwell, AWS Batch
2mo
Save
Mark Applied
Hide
Bioinformatics Engineer
Windber, Pennsylvania, United States
OnsiteFull Time
4+ YOEMaster's degree in bioinformatics/computational biology/computer science/life sciences; minimum 4 years' experience with genomic and experimental data, developing tools using C#, Python, R, JavaScript, SQL; experience with cBioPortal, AWS, Windows and Linux environments; strong communication and project management skills.
cBioPortal, C#, Python, R, JavaScript, SQL, AWS, Windows, Linux, Microsoft Office
1w
Save
Mark Applied
Hide
Bioinformatics Engineer (Hybrid)
Baltimore, Maryland, United States
$95k-$125k/yr HybridFull Time
Bachelor's degree required. Experience in software/infrastructure engineering for bioinformatics; Nextflow/Cromwell/CWL, cloud-native AWS, Terraform/AWS CDK, Python/JavaScript/TypeScript/R, RESTful APIs, Git, CI/CD; strong communication.
Nextflow, Cromwell, CWL, AWS, Terraform, AWS CDK, Python, JavaScript, TypeScript, R, JSON, RESTful APIs, Git, CI/CD, LIMS
1mo
Save
Mark Applied
Hide
Principal Bioinformatics Software Engineer
Santa Clara, California, United States
$166k-$308k/yr OnsiteFull Time
5+ YOE5+ years working with NGS data and bioinformatics pipeline verification; degree in computational biology/bioinformatics/biomedical engineering; strong Python, AWS, Linux Shell skills; experience designing and executing verification tests.
Python, AWS, Linux Shell, C++, CI/CD, GPU
3mo
Save
Mark Applied
Hide
Bioinformatics Software Engineer
San Francisco, California, United States
$130k-$160k/yr HybridAll Commitments Available
2+ YOE2+ years bioinformatics workflows, Python, Linux/Unix, cloud, CI/CD; collaborative, Humble teammate.
Python, AWS, Docker, Kubernetes, Nextflow, Snakemake, WDL, CWL, Linux/Unix
2mo
Save
Mark Applied
Hide
Senior Staff Engineer, Bioinformatics
San Diego, California, United States
$202k-$215k/yr OnsiteFull Time
6+ YOEPhD in computational biology, computer science, statistics, genomics, or related field; 6+ years in bioinformatics; strong data science and software development; cloud/HPC workflow experience; production pipelines.
Python, R, SQL, Shell
3w
Save
Mark Applied
Hide
Bioinformatics Engineer – Single-cell & Bulk Transcriptomics
United States
OnsiteFull Time
Experienced bioinformatics engineer with hands-on scRNA-seq and bulk RNA-seq processing, GCP cloud and pipeline engineering, Python/R, workflow engines, containerization, CI/CD, and transcriptomics analysis skills.
10x Genomics, SMART-seq, Cell Ranger, STARsolo, Kallisto Bustools, Alevin/Alevin Fry, Seurat, Scanpy, STAR, HISAT2, Salmon, Kallisto, FastQC, Picard, DESeq2, edgeR, limma, Python, R, Nextflow, Snakemake, Cromwell, Docker, Singularity, BigQuery, GCS, Compute Engine, Composer, Pub/Sub, GEO, ArrayExpress, Human Cell Atlas, Terraform
2mo
Save
Mark Applied
Hide
Bioinformatics Engineer
Boston, Massachusetts, United States
$75k-$82k/yr HybridFull Time
0+ YOEBachelor's degree required; MS/PhD preferred; 0-2 years experience; Perl/Python/Java; R; SQL; biology data analysis.
Perl, Python, Java, R, SQL, Web development, Databases
2w
Save
Mark Applied
Hide
Senior AI Bioinformatics Engineer
United States
RemoteFull Time
5+ YOESenior-level proficiency in backend engineering and human whole genome bioinformatics; 5+ years building production backend systems; expert TypeScript; experience with distributed systems, Apache Spark, PostgreSQL/DuckDB/Redis, message queues, retrieval and LLM-based AI systems.
TypeScript, Apache Spark, PostgreSQL, DuckDB, Redis, AWS SQS, RabbitMQ, BullMQ, Qdrant, LLM APIs
3d
Save
Mark Applied
Hide
Bioinformatics Engineer – Single-cell & Bulk Transcriptomics
United States
OnsiteFull Time
Experience processing single-cell and bulk RNA-seq data, building scalable pipelines, GCP cloud deployment, Python/R programming, workflow engines (Nextflow/Snakemake/Cromwell), and containerization for CI/CD-enabled reproducible analysis.
Bioinformatics, scRNA-seq, Bulk RNA-seq, GCP, 10x Genomics, SMART-seq, Cell Ranger, STARsolo, Kallisto Bustools, Alevin, Alevin Fry, Seurat, Scanpy, STAR, HISAT2, Salmon, Kallisto, FastQC, Picard, DESeq2, edgeR, limma, FASTQ, BCL, Python, R, Nextflow, Snakemake, Cromwell, Docker, Singularity, BigQuery, Google Cloud Storage (GCS), Compute Engine, Composer, Pub/Sub, Terraform, GEO, ArrayExpress, Human Cell Atlas, CI/CD
1mo
Save
Mark Applied
Hide
Bioinformatics Engineer, Genomics
San Francisco, California, United States
$120k-$180k/yr OnsiteFull Time
5+ YOE5+ years genomics/genetics data; population genomics experience; Python and/or R.
Python, R
2mo
Save
Mark Applied
Hide
Bioinformatics Engineer II (Remote/East Coast)
United States
$100k-$135k/yr RemoteFull Time
3+ YOE3+ years in bioinformatics engineering; proficient in Python and R; experience with single-cell data tools; container-based cloud apps; Nextflow; Git; AWS; data visualization.
Python, R, Scanpy, Seurat, Nextflow, Git, AWS, Bash, Docker, Kubernetes
2mo
Save
Mark Applied
Hide
Staff Bioinformatics Software Engineer
Houston, Texas, United States
RemoteFull Time
7+ YOE7+ years in software development; expertise in NGS, bioinformatics tools, AWS, Python/R, Linux, Git, Docker; on-site in Houston; bachelor’s in CS or related field; master’s/PhD preferred.
Python, R, Linux, Bash, AWS, S3, RDS, EC2, Snakemake, Nextflow, Git, Docker, Conda, Bowtie 2, BWA, GATK, SAMtools, FastQC, NVIDIA Parabricks
3d
Save
Mark Applied
Hide
Bioinformatics Scientist
Hayward, California, United States
$119k-$149k/yr OnsiteFull Time
3+ YOEMaster's in Biology/Biomedical Engineering/Bioinformatics plus 3 years R&D experience or Doctorate; strong research skills in methylation algorithm development, pipeline validation, NGS data analysis, and statistical QC.
DMFR, next-generation sequencing
3w
Save
Mark Applied
Hide
Senior Bioinformatics Scientist
Sparks, Maryland, United States
$96k-$153k/yr OnsiteFull Time
3+ YOEBachelor's in CS/Engineering/Bioinformatics/Statistics required; 3+ years experience; proficiency with Python, R, and SQL; strong communication, statistics, and data analysis skills; master's preferred.
Python, R, SQL
1w
Save
Mark Applied
Hide
Senior Bioinformatics / Scientific Data Engineer
Rockville, Maryland, United States
$98k-$163k/yr OnsiteFull Time
5+ YOEMaster's degree and 5+ years' relevant experience; proficiency in Python and R; experience with workflow tools, databases, and cloud/HPC; ability to obtain Public Trust; strong analytical and communication skills.
Python, R, HPC
1mo
Save
Mark Applied
Hide
NLM Bioinformatics Specialist and Developer (SME) I - III
Bethesda, Maryland, United States
$90k-$135k/yr OnsiteFull Time
4+ YOESME I-III with Python, ML/NLP, biomedical informatics; experience in software development and data analytics.
Python, Java, C++, R, JavaScript, SQL, MATLAB, NLP, ML, DL, SDLC, OWASP, US-CERT
1w
Save
Mark Applied
Hide
Bioinformatics Full-Stack Developer
Charlottesville, Virginia, United States
$105k/yr OnsiteFull Time
5+ YOE5+ years full-stack development experience, BS/BA in CS or related, advanced C++ and Unix/Linux proficiency, Git and CI/CD experience, pipeline/workflow and containerization familiarity, strong communication and project management skills.
Unix/Linux, Git, C++, Python, R, RMarkdown, tidyverse, NextFlow, SnakeMake, AWS, Azure, CI/CD
2mo
Save
Mark Applied
Hide
Senior Scientist - Oligo Bioinformatics (Billerica, Massachusetts, US, 01821)
Billerica, Massachusetts, United States
$113k-$169k/yr OnsiteFull Time
3+ YOEPhD in Chemistry, Chemical Engineering or other Science or Engineering discipline with 3+ years of direct experience in the oligonucleotide field.
BLAST, RNA folding, siRNA design tools
Explore Jobs