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43 lims engineer jobs at 31 companies in Alameda, CA

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Sr. Director, Lab Pipelines and LIMS
San Diego or South San Francisco
$243k-$273k/yr HybridFull Time
Veracyte
VeracyteNASDAQ: VCYT: Provides genomic diagnostic tests for precise cancer diagnosis.
12+ YOEBachelor's degree,12+ years software engineering experience including multi-team leadership, experience with LIMS and sequencing/secondary analysis pipelines, regulated environments (CLIA/CAP/FDA), strong stakeholder and communication skills.
LIMS, CI/CD
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Lead Automation Engineer, MES & Digital Systems - Project Farma
Alabama or California or Colorado or District of Columbia or Illinois or Indiana or Massachusetts or Maryland or Missouri or North Carolina or New Jersey or New York or Ohio or Oregon or Pennsylvania or Texas or Virginia or Boston or Philadelphia or Chicago or Indianapolis or Columbus or St Louis or Kansas City or Raleigh or Durham or Houston or Dallas or Boulder or Portland or San Francisco or San Diego or Los Angeles
RemoteFull Time
PerkinElmer
PerkinElmer: Provides analytical instruments and laboratory services for scientific industries.
9+ YOEBachelor's in engineering, 9+ years automation experience in GMP life sciences, MES/ERP/LIMS/CMMS integration expertise, URS/FRS/DS documentation experience, ISA-88/ISA-95 and GAMP 5 knowledge, willingness to travel and valid driver’s license.
MES, ERP, LIMS, CMMS, DCS, PLC, SCADA, historians, Data Repositories, eBR, RbE, eLogbooks, ISA-88, ISA-95, GAMP 5, 21 CFR Part 11, FAT, SAT, IQ/OQ, PQ
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Senior Automation Engineer
South San Francisco, California, United States
$173k-$183k/yr OnsiteFull Time
insitro
insitro: Decodes biology using machine learning to discover new medicines
3+ YOEDegree in engineering or science with 3+ years automation experience (varies by degree), expertise in lab automation, robotics and liquid handling, programming in Python/SQL/C#, and integration with LIMS.
Python, SQL, C#, LIMS
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Senior Metrology Engineer
Milpitas, California, United States
$110k-$185k/yr OnsiteFull Time
Commonwealth Fusion Systems
Commonwealth Fusion Systems: Designing and building commercial fusion energy power plants.
7+ YOEB.S. in a technical field or equivalent experience, 7+ years as a process or metrology engineer, deep knowledge of optical/electron microscopy, surface/optical/NIR/x-ray measurements, vendor management, SOP creation, LIMS/MES data systems, safety discipline, and occasional lifting/travel/on-call availability.
optical and electron microscopy, surface probe measurements, optical and NIR probes, x-ray measurements, laboratory information management systems, manufacturing execution systems
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Automation Consulting Engineer
San Francisco, California, United States
$100k-$120k/yr FieldFull Time
Hamilton Storage
Hamilton Storage: Automated sample storage and management for life science research.
3+ YOEBachelor's degree,3+ years in technical consulting or pre-sales engineering,LEAN Six Sigma training,proficiency with Visio/AutoCAD and advanced Excel,experience with LIMS/LIS/ERP,ability to travel 40–60%.
Microsoft Visio, AutoCAD, Microsoft Excel, Microsoft Office Suite, HubSpot, LIMS, LIS, ERP
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Process Engineer, Lead/Staff
Oakland, California, United States
OnsiteFull Time
Remedy Scientific
Remedy Scientific: Provides automated systems for large-scale environmental soil remediation.
5+ YOEHands-on process engineering experience across lab or manufacturing operations, ability to map and optimize multi-step sample workflows, define automation and software requirements, and implement QA/QC improvements.
LIMS, GC-MS, LC-MS/MS, ICP-OES, XRF, AI coding tools
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Automation Engineer I/II (Contract)
Palo Alto, California, United States
$53-$73/hr OnsiteContract
DELFI Diagnostics
DELFI Diagnostics: Developing blood-based tests for early cancer detection.
3+ YOEB.S. in engineering/biology required; experience developing assay automation on liquid handlers (Level II: 3+ years). Strong analytical, communication, and troubleshooting skills; regulated-lab experience preferred.
Hamilton, Tecan, Beckman, Agilent, Sapio, LIMS
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Sr SampleManager Implementation Engineer
Indiana or New Brunswick or Chicago or Cambridge or Raleigh or Indianapolis or San Francisco or Houston or Philadelphia
$94k-$141k/yr RemoteFull Time
Thermo Fisher Scientific
Thermo Fisher ScientificNYSE: TMO: Sells equipment and chemicals for scientific research and healthcare.
7+ YOEBachelor’s degree or equivalent experience; 7+ years implementing LIMS/informatics solutions; SampleManager expertise, integrations, databases, troubleshooting, testing, deployment, and documentation.
SampleManager LIMS, SampleManager Integration Manager, Oracle, SQL Server, PostgreSQL, C#, .NET, SDLC, Quality Management Systems, GMP, GLP, FDA 21 CFR Part 11, ISO
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Process Engineer, Thin Films
Menlo Park, California, United States
$45-$65/hr OnsiteContract
Periodic Labs
Periodic Labs: Builds autonomous laboratories for AI-driven scientific discovery.
3+ YOERequires 3+ years operating thin-film deposition or metrology equipment, sample preparation, maintenance, cleanroom and chemical safety experience, documentation rigor, and independent prioritization. High school diploma required; technical degree preferred.
LIMS, MES, SPC
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Senior SQA Engineer – Data & AI Platforms
San Jose, California, United States
$100k-$164k/yr OnsiteFull Time
Bio-Techne
Bio-TechneNASDAQ: TECH: Provides reagents, instruments, and diagnostic tools for life sciences.
6+ YOEBachelor's in CS (or equivalent) and 6+ years test automation experience; Python, SQL, APIs, Databricks/Spark familiarity; experience with test automation tools, CI/CD, ELN/LIMS, cloud platforms, and AI/data validation.
TestComplete, Ranorex, Squish, Databricks, Spark, JSON, CSV, Parquet, Python, SQL, APIs, React, Flask, shell scripting, Azure, AWS, GCP, GitHub, GitLab, Jenkins, Benchling, LabArchives, ELN, LIMS, LLMs, CI/CD, AI-assisted testing tools
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Staff Software Engineer
Brisbane or California or United States
$140k-$175k/yr OnsiteFull Time
CareDx
CareDxNASDAQ: CDNA: Develops diagnostic tests and digital tools for transplant care.
8+ YOEBachelor's degree or equivalent experience, 8+ years software engineering with hands-on LIMS experience (Labbit, LabAdvantage), integrations (REST, HL7, FHIR), proficiency in Java/C#/Python/JavaScript and SQL, strong lab workflow and data modeling skills.
Labbit, LabAdvantage, ELN, EMR, EHR, REST, HL7, FHIR, APIs, Java, C#, Python, JavaScript, SQL, SaaS
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Senior Cell Test Infrastructure Engineer
Hayward, California, United States
$112k-$160k/yr OnsiteFull Time
Blue Current
Blue Current: Develops silicon solid-state batteries for mobility and stationary storage.
3+ YOEExperience building and operating battery test labs, instrument procurement/installation/calibration, test-management systems, scripting for automation (e.g., Python), and strong troubleshooting and SOP-writing skills.
Python, SQL, Arbin, Maccor, Neware, BioLogic, LIMS
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3mo
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Applied AI Engineer
Lincoln or San Francisco
$125k-$165k/yr RemoteFull Time
TELCOR
TELCOR: Provides healthcare software for laboratory and point-of-care operations.
4+ YOEPython experience; production AI applications; healthcare domain familiarity; LIS/LIMS, HL7/FHIR preferred; 4+ years in a technical role.
Python, HL7, FHIR, LIS/LIMS, REST API
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Principal Software Engineer
South San Francisco, California, United States
$220k-$275k/yr HybridFull Time
Natera
NateraNASDAQ: NTRA: Provides clinical genetic testing and diagnostics services.
10+ YOE10+ years software engineering experience; production cloud infrastructure (AWS preferred), Kubernetes, Terraform, Python/Go/Java; experience designing platforms, mentoring engineers, and shipping production software.
Claude Code, Cursor, AWS, GCP, Azure, Kubernetes, Terraform, Python, Go, Java, Groovy, Helm, Nextflow, WDL, Django, React, Airflow, Argo, Temporal, Dagster, LIMS, MCP servers
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2mo
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Senior Software Engineer, Scientific System of Record
Cambridge or San Francisco
$144k-$240k/yr OnsiteFull Time
Lila Sciences
Lila Sciences: Develops an AI platform for autonomous scientific research and discovery.
4+ YOEBachelor's or Master's in CS/Engineering, 4+ years engineering experience, strong in front-end or backend, TypeScript/React and Python experience, API and data modeling skills, production systems and cloud/DevOps familiarity.
TypeScript, React, Python, SQL, NoSQL, vector databases, data lakehouses, AWS, GCP, Azure, Kubernetes, Terraform, CloudFormation, GitHub Actions, Git, Flyte, Temporal, Airflow, Prefect, LIMS, ELN
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3d
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Sr. Software Engineer, Clinical Software
Fremont, California, United States
$150k-$175k/yr HybridFull Time
Personalis
PersonalisNASDAQ: PSNL: Provides genomic sequencing and diagnostic testing for cancer management.
5+ YOEBachelor's degree in computer science, engineering, or related field; 5 years of software development experience; proficiency in Python or Java, AWS, databases, REST APIs, version control, and CI/CD.
Laboratory Information Management Systems (LIMS), Python, Java, AWS, PostgreSQL, MySQL, REST APIs, GitHub, Bitbucket, CI/CD, Flask, FastAPI, JavaScript, React, Angular, Vue.js, Docker, NoSQL
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3d
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Associate Director, Principal Data Engineer
San Francisco, California, United States
$177k-$247k/yr HybridFull Time
Vir Biotechnology
Vir BiotechnologyNASDAQ: VIR: Developing medicines for infectious diseases and cancer.
12+ YOEBS/MS in a technical field and 12+ years in data or software engineering, scientific computing, cloud architecture, or applications; expertise in Python/Java, AWS, AI/ML, scientific data platforms, and technical leadership.
Python, Java, GPT, Claude, Gemini, LIMS, ELN, Experimenta, AWS, Databricks, Snowflake, Redshift, Spark, Airflow, Nextflow, SeqAssembler, HPD/dAIsY, SASTRY, OPAL Miner
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Software Engineer (Production Informatics)
Hayward, California, United States
OnsiteFull Time
Predicine
Predicine: Develops liquid biopsy cancer diagnostics and precision medicine solutions.
7+ YOE7+ years of software development experience; strong Python and REST API skills; TypeScript, React, SQL, Docker, CI/CD, cloud deployment, automated testing, and secure coding experience; bachelor's degree or equivalent practical experience.
Git, Docker, SQL, Python, REST API, Django, Django REST framework (DRF), TypeScript, React, Cursor, ChatGPT, Claude, AWS, Azure, CI/CD, LIMS
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Scientific Data Engineer (Institutional Informatics Team - Joint Genome Institute)
Berkeley, California, United States
$117k-$174k/yr HybridFull Time, Temporary
Lawrence Berkeley National Laboratory
Lawrence Berkeley National Laboratory: Conducts multidisciplinary scientific research for the U.S. Department of Energy.
5+ YOEBachelor's degree or equivalent in computer science or related field, 5+ years' experience, Python, databases, data engineering, production systems, APIs, and scientific or operational data platforms; senior level requires 8+ years.
Airflow, Kafka, Python, Laboratory Information Management System (LIMS), Data Warehouse, Data Lakehouse, APIs
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Scientific Data Engineer (Institutional Informatics Team - Joint Genome Institute)
Berkeley, California, United States
$117k-$174k/yr HybridFull Time, Temporary
Lawrence Berkeley National Laboratory
Lawrence Berkeley National Laboratory: Conducts scientific research to address global challenges.
5+ YOEBachelor’s degree in Computer Science or related field, 5+ years’ experience developing production software and data systems, Python, databases, data engineering, APIs, and scientific workflows; senior level requires 8+ years.
Airflow, Kafka, Python, Laboratory Information Management System (LIMS), Laboratory Management System (LMS), Data Warehouse, Data Lakehouse, APIs
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