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54 lims engineer jobs at 32 companies in San Francisco, CA

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Sr. Director, Lab Pipelines and LIMS
San Diego or South San Francisco
$243k-$273k/yr HybridFull Time
Veracyte
VeracyteNasdaq Stock Market LLC: VCYT: Public global cancer diagnostics providing molecular tests that help clinicians guide diagnosis and treatment.
12+ YOEBachelor's degree,12+ years software engineering experience including multi-team leadership, experience with LIMS and sequencing/secondary analysis pipelines, regulated environments (CLIA/CAP/FDA), strong stakeholder and communication skills.
LIMS, CI/CD
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3d
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LIMS System Director
Davis or Richmond or Sacramento
$10k-$22k/mo OnsiteFull Time
University of California, Davis
University of California, Davis: Public land-grant research university serving students and communities through education, research, healthcare, and public service.
6+ YOEBachelor's degree or equivalent experience; 6+ years in senior data integration and complex application development leadership; 5+ years troubleshooting enterprise application performance; expertise in informatics, data engineering, SDLC, and California IT regulations.
Laboratory Information Management System (LIMS), Laboratory Data Exchange (LDX), Cal-LIMS, E-LIMS, HL7, Systems Development Life Cycle (SDLC)
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Lead Automation Engineer, MES & Digital Systems - Project Farma
Alabama or California or Colorado or District of Columbia or Illinois or Indiana or Massachusetts or Maryland or Missouri or North Carolina or New Jersey or New York or Ohio or Oregon or Pennsylvania or Texas or Virginia or Boston or Philadelphia or Chicago or Indianapolis or Columbus or St Louis or Kansas City or Raleigh or Durham or Houston or Dallas or Boulder or Portland or San Francisco or San Diego or Los Angeles
RemoteFull Time
Project Farma
Project Farma: Patient-focused biopharmaceutical consulting firm providing manufacturing strategy and execution for life-science companies.
9+ YOEBachelor's in engineering, 9+ years automation experience in GMP life sciences, MES/ERP/LIMS/CMMS integration expertise, URS/FRS/DS documentation experience, ISA-88/ISA-95 and GAMP 5 knowledge, willingness to travel and valid driver’s license.
MES, ERP, LIMS, CMMS, DCS, PLC, SCADA, historians, Data Repositories, eBR, RbE, eLogbooks, ISA-88, ISA-95, GAMP 5, 21 CFR Part 11, FAT, SAT, IQ/OQ, PQ
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Senior Automation Engineer
South San Francisco, California, United States
$173k-$183k/yr OnsiteFull Time
insitro
insitro: Private AI-driven drug discovery developing medicines for patients using human biology, machine learning, and automated experiments.
3+ YOEDegree in engineering or science with 3+ years automation experience (varies by degree), expertise in lab automation, robotics and liquid handling, programming in Python/SQL/C#, and integration with LIMS.
Python, SQL, C#, LIMS
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Senior Metrology Engineer
Milpitas, California, United States
$110k-$185k/yr OnsiteFull Time
Commonwealth Fusion Systems
Commonwealth Fusion Systems: Private fusion-energy developing high-temperature-superconducting tokamaks and commercial fusion power plants for electricity markets worldwide.
7+ YOEB.S. in a technical field or equivalent experience, 7+ years as a process or metrology engineer, deep knowledge of optical/electron microscopy, surface/optical/NIR/x-ray measurements, vendor management, SOP creation, LIMS/MES data systems, safety discipline, and occasional lifting/travel/on-call availability.
optical and electron microscopy, surface probe measurements, optical and NIR probes, x-ray measurements, laboratory information management systems, manufacturing execution systems
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Automation Consulting Engineer
San Francisco, California, United States
$100k-$120k/yr FieldFull Time
Hamilton Storage GmbH
Hamilton Storage GmbH: Swiss private developer and manufacturer of automated sample-storage robots for research, pharmaceutical, diagnostic, and government customers.
3+ YOEBachelor's degree,3+ years in technical consulting or pre-sales engineering,LEAN Six Sigma training,proficiency with Visio/AutoCAD and advanced Excel,experience with LIMS/LIS/ERP,ability to travel 40–60%.
Microsoft Visio, AutoCAD, Microsoft Excel, Microsoft Office Suite, HubSpot, LIMS, LIS, ERP
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Process Engineer, Lead/Staff
Oakland, California, United States
OnsiteFull Time
Remedy Scientific
Remedy Scientific: Environmental remediation technology building AI-driven systems to restore contaminated land.
5+ YOEHands-on process engineering experience across lab or manufacturing operations, ability to map and optimize multi-step sample workflows, define automation and software requirements, and implement QA/QC improvements.
LIMS, GC-MS, LC-MS/MS, ICP-OES, XRF, AI coding tools
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Automation Engineer I/II (Contract)
Palo Alto, California, United States
$53-$73/hr OnsiteContract
DELFI Diagnostics
DELFI Diagnostics: Precision oncology developing AI-powered blood-based liquid biopsy tests for cancer screening and treatment monitoring.
3+ YOEB.S. in engineering/biology required; experience developing assay automation on liquid handlers (Level II: 3+ years). Strong analytical, communication, and troubleshooting skills; regulated-lab experience preferred.
Hamilton, Tecan, Beckman, Agilent, Sapio, LIMS
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Sr SampleManager Implementation Engineer
Indiana or New Brunswick or Chicago or Cambridge or Raleigh or Indianapolis or San Francisco or Houston or Philadelphia
$94k-$141k/yr RemoteFull Time
Thermo Fisher Scientific
Thermo Fisher ScientificNYSE: TMO: The world leader in serving science.
7+ YOEBachelor’s degree or equivalent experience; 7+ years implementing LIMS/informatics solutions; SampleManager expertise, integrations, databases, troubleshooting, testing, deployment, and documentation.
SampleManager LIMS, SampleManager Integration Manager, Oracle, SQL Server, PostgreSQL, C#, .NET, SDLC, Quality Management Systems, GMP, GLP, FDA 21 CFR Part 11, ISO
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Process Engineer, Thin Films
Menlo Park, California, United States
$45-$65/hr OnsiteContract
Periodic Labs
Periodic Labs: N AI and physical-sciences building autonomous laboratories and AI scientists for materials discovery.
3+ YOERequires 3+ years operating thin-film deposition or metrology equipment, sample preparation, maintenance, cleanroom and chemical safety experience, documentation rigor, and independent prioritization. High school diploma required; technical degree preferred.
LIMS, MES, SPC
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Senior SQA Engineer – Data & AI Platforms
San Jose, California, United States
$100k-$164k/yr OnsiteFull Time
R&D Systems
R&D SystemsNASDAQ: TECH: Public U.S. life sciences manufacturer of reagents, analytical instruments, and diagnostics serving research, bioprocessing, and clinical markets.
6+ YOEBachelor's in CS (or equivalent) and 6+ years test automation experience; Python, SQL, APIs, Databricks/Spark familiarity; experience with test automation tools, CI/CD, ELN/LIMS, cloud platforms, and AI/data validation.
TestComplete, Ranorex, Squish, Databricks, Spark, JSON, CSV, Parquet, Python, SQL, APIs, React, Flask, shell scripting, Azure, AWS, GCP, GitHub, GitLab, Jenkins, Benchling, LabArchives, ELN, LIMS, LLMs, CI/CD, AI-assisted testing tools
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Staff Software Engineer
Brisbane or California or United States
$140k-$175k/yr OnsiteFull Time
CareDx
CareDxNASDAQ: CDNA: Public precision-medicine diagnostics serving transplant, cell-therapy, and specialty-oncology patients and clinicians.
8+ YOEBachelor's degree or equivalent experience, 8+ years software engineering with hands-on LIMS experience (Labbit, LabAdvantage), integrations (REST, HL7, FHIR), proficiency in Java/C#/Python/JavaScript and SQL, strong lab workflow and data modeling skills.
Labbit, LabAdvantage, ELN, EMR, EHR, REST, HL7, FHIR, APIs, Java, C#, Python, JavaScript, SQL, SaaS
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Senior Cell Test Infrastructure Engineer
Hayward, California, United States
$112k-$160k/yr OnsiteFull Time
Blue Current
Blue Current: Private U.S. solid-state battery developer serving electric-vehicle and stationary-storage markets with fully dry silicon technology.
3+ YOEExperience building and operating battery test labs, instrument procurement/installation/calibration, test-management systems, scripting for automation (e.g., Python), and strong troubleshooting and SOP-writing skills.
Python, SQL, Arbin, Maccor, Neware, BioLogic, LIMS
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3mo
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Applied AI Engineer
Lincoln or San Francisco
$125k-$165k/yr RemoteFull Time
TELCOR
TELCOR: Private healthcare software provider serving laboratories, pathology practices, and hospitals with point-of-care and revenue cycle management tools.
4+ YOEPython experience; production AI applications; healthcare domain familiarity; LIS/LIMS, HL7/FHIR preferred; 4+ years in a technical role.
Python, HL7, FHIR, LIS/LIMS, REST API
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2mo
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Principal Software Engineer
South San Francisco, California, United States
$220k-$275k/yr HybridFull Time
Natera
NateraNASDAQ: NTRA: Global leader in cell-free DNA testing and diagnostics.
10+ YOE10+ years software engineering experience; production cloud infrastructure (AWS preferred), Kubernetes, Terraform, Python/Go/Java; experience designing platforms, mentoring engineers, and shipping production software.
Claude Code, Cursor, AWS, GCP, Azure, Kubernetes, Terraform, Python, Go, Java, Groovy, Helm, Nextflow, WDL, Django, React, Airflow, Argo, Temporal, Dagster, LIMS, MCP servers
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2mo
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Senior Software Engineer, Scientific System of Record
Cambridge or San Francisco
$144k-$240k/yr OnsiteFull Time
Lila Sciences
Lila Sciences: Builds AI and autonomous labs for scientific discovery.
4+ YOEBachelor's or Master's in CS/Engineering, 4+ years engineering experience, strong in front-end or backend, TypeScript/React and Python experience, API and data modeling skills, production systems and cloud/DevOps familiarity.
TypeScript, React, Python, SQL, NoSQL, vector databases, data lakehouses, AWS, GCP, Azure, Kubernetes, Terraform, CloudFormation, GitHub Actions, Git, Flyte, Temporal, Airflow, Prefect, LIMS, ELN
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Sr. Software Engineer, Clinical Software
Fremont, California, United States
$150k-$175k/yr HybridFull Time
Personalis, Inc.
Personalis, Inc.Nasdaq: PSNL: Public precision-oncology genomics providing cancer testing for patients, clinicians, biopharma companies, and researchers.
5+ YOEBachelor's degree in computer science, engineering, or related field; 5 years of software development experience; proficiency in Python or Java, AWS, databases, REST APIs, version control, and CI/CD.
Laboratory Information Management Systems (LIMS), Python, Java, AWS, PostgreSQL, MySQL, REST APIs, GitHub, Bitbucket, CI/CD, Flask, FastAPI, JavaScript, React, Angular, Vue.js, Docker, NoSQL
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Associate Director, Principal Data Engineer
San Francisco, California, United States
$177k-$247k/yr HybridFull Time
Vir Biotechnology
Vir BiotechnologyNasdaq Global Select Market: VIR: Clinical-stage biopharmaceutical developing immune-system therapies for serious infectious diseases and cancer.
12+ YOEBS/MS in a technical field and 12+ years in data or software engineering, scientific computing, cloud architecture, or applications; expertise in Python/Java, AWS, AI/ML, scientific data platforms, and technical leadership.
Python, Java, GPT, Claude, Gemini, LIMS, ELN, Experimenta, AWS, Databricks, Snowflake, Redshift, Spark, Airflow, Nextflow, SeqAssembler, HPD/dAIsY, SASTRY, OPAL Miner
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Backend & AI Platform Engineer
San Jose or Indianapolis
$150k-$200k/yr OnsiteFull Time
Beckman Coulter
Beckman Coulter: -owned life sciences supplying research instruments and reagents to academic, biopharmaceutical, clinical, and industrial laboratories.
7+ YOEBachelor’s or master’s degree in computer science, software engineering, or related field; 7+ years building distributed backend systems and APIs; experience with event-driven architectures, microservices, cloud platforms, LLM applications, and multi-agent systems.
AWS, Azure, GCP, LIMS, ELN, SiLA 2, HIPAA, SOC 2
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2w
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Software Engineer (Production Informatics)
Hayward, California, United States
OnsiteFull Time
Predicine
Predicine: Molecular diagnostics developing liquid-biopsy genomic tests and algorithms for cancer monitoring, treatment selection, and precision oncology.
7+ YOE7+ years of software development experience; strong Python and REST API skills; TypeScript, React, SQL, Docker, CI/CD, cloud deployment, automated testing, and secure coding experience; bachelor's degree or equivalent practical experience.
Git, Docker, SQL, Python, REST API, Django, Django REST framework (DRF), TypeScript, React, Cursor, ChatGPT, Claude, AWS, Azure, CI/CD, LIMS
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