31 proteomics jobs at 21 companies in Boston, MA
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Proteomics Scientist
Boston, Massachusetts, United States
OnsiteFull Time
Proxima: Uses AI to design proximity-based medicines for undruggable proteins.
Experience in mass‑spec sample prep and proteomics workflows, ability to operate/maintain LC/MS (Thermo Fisher Neo Vanquish, Orbitrap/Astral), collaborate with computational teams, and document scientific data.
LC/MS, Thermo Fisher Neo Vanquish LC, Orbitrap, Astral
2mo
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Senior Scientist or Principal Scientist, Targeted Proteomics
Watertown, Massachusetts, United States
$115k-$215k/yr OnsiteFull Time
2+ YOEPhD in Biochemistry/Biology/Chemistry or Chemical Biology with 2+ years in targeted proteomics; or BS/MS with 8+ years of relevant experience.
LC-MS, nanoLC, Orbitrap, Skyline, PRM, MRM, Mass Spectrometry, Immunoaffinity enrichment
6d
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Founding Computational Scientist, Proteomics
Cambridge, Massachusetts, United States
OnsiteFull Time
PhD or equivalent depth; large-scale bottom-up proteomics; quantitative statistics; containerized workflows; Python, Git/GitHub, and reproducible pipeline development. AWS and experimental fluency valued.
Evosep LC, Orbitrap Astral Zoom, Spectronaut, DIA-NN, FragPipe, MSFragger, AlphaDIA, MaxQuant, Skyline, Nextflow, WDL, Snakemake, Python, Git, GitHub, AWS, Claude Code, Codex, LIMS, ProteomeXchange, PRIDE, MassIVE, GEO, SRA
1mo
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Field Applications Scientist, Proteomics (Remote - Boston)
Boston or Waltham
$83k-$130k/yr RemoteFull Time
3+ YOEProvide technical support and training for Olink proteomics products; method development, troubleshooting, and application development; Bachelor's (5+ yrs) or Advanced degree (3+ yrs) in chemistry/biochemistry/molecular biology or related; strong communication and presentation; willingness to travel 25–50%.
Olink
2mo
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Postdoctoral Associate, Pulmonary Center, Department of Medicine
Boston, Massachusetts, United States
$68k-$75k/yr OnsiteFull Time
Postdoctoral research in immunology/host–pathogen interactions; experience with experimental immunology, mouse infection models, and transcriptomic or proteomic approaches preferred.
scRNA-Seq, TOTAL-Seq, phospho-/proteomics, proteomics
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Discovery Postdoctoral Fellow in Neuroscience
Cambridge, Massachusetts, United States
$87k/yr OnsiteFull Time
PhD conferred in 2026 in neuroscience/biology, experience with human iPSC neuronal/glial models, proteomics, multi-omics integration, confocal and high-content imaging, and independent research.
human iPSC, confocal microscopy, high-content imaging, proteomics, transcriptomics, genomics, Halo µMapping
3w
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Scientist II/Sr. Scientist I, Chemical Biology
Boston, Massachusetts, United States
$145k-$185k/yr OnsiteFull Time
2+ YOEPhD in relevant field with 2+ years industry/postdoc experience; proficiency operating mass spectrometry and HPLC; experience with MS-based proteomics; programming (Python or R) desirable; capable of routine lab tasks.
HPLC, Mass Spectrometry (MS), Proteome Discoverer, Skyline, DIA-NN, Spectronaut, MaxQuant, Python, R
2mo
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Senior Scientist
Waltham, Massachusetts, United States
$120k-$150k/yr OnsiteFull Time
4+ YOEPhD in proteomics or related field; 4+ years industry proteomics/translational biomarker experience; mass spectrometry expertise; collaboration with cross-functional teams; data interpretation skills.
Mass spectrometry, LC-MS/MS, Proteomics platforms, Bioinformatics tools
3mo
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Research Assistant III- Technology Development
Boston, Massachusetts, United States
OnsiteFull Time
2+ YOEBachelor’s in biological science; 2+ years molecular biology/biochemistry; Python/R; experience with NGS libraries or proteomics; full-time.
Python, R, NGS, Mass spectrometry, Liquid handling automation
1mo
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Bioinformatician - Open Rank
Worcester, Massachusetts, United States
$50k-$110k/yr OnsiteFull Time
0+ YOEDesign and maintain bioinformatics pipelines, analyze large genomics/proteomics datasets, develop custom scripts and tools, and collaborate with researchers; strong programming and data‑analysis background required.
Perl, C++, R, MySQL, Java, Python, Linux, Shell, NumPy, pandas, polars, matplotlib, Jupyter, SQL, Nextflow, Snakemake, SAM, BAM, CRAM, Parquet, HDF5, AWS, HTML, CSS, JavaScript, Django, Go, Rust, GitHub
6d
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Research Associate
Newton or Boston
$63k-$100k/yr OnsiteFull Time
1+ YOEBSc or MSc in a relevant scientific field, 1–3 years of proteomic or lipidomic sample preparation and laboratory experience with biological samples, plus strong computer and documentation skills.
TrueDiscovery, TrueTarget, TrueSignature, Spectronaut, PQ500, HPLC-MS/MS, timsTOF, EVOQ, Evosep, Elute, LC-MS, Q-TOF, Orbitrap, GCLP, Microsoft Office, Microsoft Excel, Microsoft Word, Microsoft PowerPoint, ELNs
5d
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Research Associate
Newton or Boston
$63k-$100k/yr OnsiteFull Time
1+ YOEBSc or MSc in a relevant scientific field; 1–3 years of proteomic or metabolic/lipidomic sample preparation and laboratory experience with biological samples; strong computer and documentation skills.
Microsoft Office, LC-MS, timsTOF, EVOQ, Evosep, Elute, Q-TOF, Orbitrap, ELNs, MS Office
1d
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Sr. Scientist I (Novel Biologic Entities- Bioanalysis and Translational Science Group- QTAS)
Worcester, Massachusetts, United States
$97k-$184k/yr OnsiteFull Time
10+ YOEPh.D. with 0+ years, M.S. with 8+ years, or B.S. with 10+ years in pharmaceutical or biotechnology industry; LC-MS, protein mass spectrometry, bioanalysis, proteomics, and data analysis experience.
LC/MS, liquid chromatography/mass spectrometry, QTOF, TOF, Orbitrap, Protein Metrics Byos, GraphPad Prism, electronic laboratory notebooks, automated liquid handling systems
2mo
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Postdoctoral Research Fellow
Boston, Massachusetts, United States
$60k-$76k/yr OnsiteFull Time
0+ YOEDoctoral degree or M.D.; 0-1 years postdoctoral research experience; strong quantitative/computational skills in human genetics, proteomics, metabolomics, and cohort data; ability to develop independent projects and publish.
1mo
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Scientist, Computational Biology
Cambridge, Massachusetts, United States
$115k-$165k/yr OnsiteFull Time
2+ YOEPhD in computational biology or related field, 2+ years industry experience, strong mass-spec proteomics and multi-omics analysis, proficiency in R or Python, statistical and ML expertise, NGS experience.
R, Python, NGS, transformers, Greenhouse
1mo
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Discovery Postdoctoral Fellow in Neuroscience
Cambridge, Massachusetts, United States
$58k-$107k/yr OnsiteFull Time
PhD (conferred 2026) in neuroscience/biology or related field, experience with human iPSC neuron–glia models, confocal and high‑content imaging, proteomics/transcriptomics and multi‑omics analysis, strong publication record.
Artificial Intelligence, Machine Learning (ML), Halo µMapping, confocal microscopy, high-content imaging
2w
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sRAM Spatial Regional Account Manager (North East)
Boston, Massachusetts, United States
$88k-$141k/yr FieldFull Time
5+ YOEMS or BS in molecular biology/biochemistry or related, 5+ years field sales experience selling capital equipment, spatial genomics/proteomics knowledge preferred, strong CRM and presentation skills, ability to travel 50–75%.
CRM, Miller Heiman
1mo
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Mass Spectrometry Scientist
Watertown, Massachusetts, United States
$86k-$119k/yr OnsiteFull Time
Convergent Research: Incubates and operates non-profit Focused Research Organizations to solve scientific bottlenecks.
5+ YOEMasters or PhD in Biology/Chemistry/Biochemistry; 5+ years maintaining mass spectrometers; experience optimizing LC-MS/MS for bottom-up proteomics (DDA/DIA); lab prep, instrument maintenance, experiment design; Python/R proficiency preferred.
Thermo, Bruker, Sciex, LC-MS/MS, Python, R
2mo
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Principal Data Scientist - Immunology - (2 positions)
Titusville or Cambridge or Raritan or Spring House or San Diego
$117k-$201k/yr HybridFull Time
5+ YOEPrincipal Data Scientist with bioinformatics/biomedical data expertise; 5+ years health informatics; semantic tech, ontologies, knowledge graphs; PhD or Master preferred.
Semantic Web, SPARQL, RDF, OWL, Graph Databases, Neo4j, Amazon Neptune, REST, GraphQL, Docker, CI/CD, Jenkins, GitLab, Azure DevOps, SQL, NoSQL, Proteomics, Genomics
1d
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Research Fellow
Boston or Boston
$72k-$76k/yr OnsiteFull Time
Conduct independent and collaborative cancer biology research using advanced laboratory techniques, analyze data, develop protocols, publish findings, obtain funding, mentor researchers, and follow safety and ethics requirements.
genomics, proteomics
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